vtkblackoilmicpmodule.hh

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// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
// vi: set et ts=4 sw=4 sts=4:
/*
  This file is part of the Open Porous Media project (OPM).
 
  OPM is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 2 of the License, or
  (at your option) any later version.
 
  OPM is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with OPM.  If not, see <http://www.gnu.org/licenses/>.
 
  Consult the COPYING file in the top-level source directory of this
  module for the precise wording of the license and the list of
  copyright holders.
*/
#ifndef EWOMS_VTK_BLACK_OIL_MICP_MODULE_HH
#define EWOMS_VTK_BLACK_OIL_MICP_MODULE_HH
 
#include <opm/material/densead/Math.hpp>
 
#include "vtkmultiwriter.hh"
#include "baseoutputmodule.hh"
 
#include <opm/models/utils/propertysystem.hh>
#include <opm/models/utils/parametersystem.hh>
#include <opm/models/blackoil/blackoilproperties.hh>
 
#include <dune/common/fvector.hh>
 
#include <cstdio>
 
namespace Opm::Properties {
 
namespace TTag {
 
// create new type tag for the VTK multi-phase output
struct VtkBlackOilMICP {};
 
} // namespace TTag
 
// create the property tags needed for the MICP output module
template<class TypeTag, class MyTypeTag>
struct VtkWriteMicrobialConcentration { using type = UndefinedProperty; };
template<class TypeTag, class MyTypeTag>
struct VtkWriteOxygenConcentration { using type = UndefinedProperty; };
template<class TypeTag, class MyTypeTag>
struct VtkWriteUreaConcentration { using type = UndefinedProperty; };
template<class TypeTag, class MyTypeTag>
struct VtkWriteBiofilmConcentration { using type = UndefinedProperty; };
template<class TypeTag, class MyTypeTag>
struct VtkWriteCalciteConcentration { using type = UndefinedProperty; };
 
// set default values for what quantities to output
template<class TypeTag>
struct VtkWriteMicrobialConcentration<TypeTag, TTag::VtkBlackOilMICP> { static constexpr bool value = true; };
template<class TypeTag>
struct VtkWriteOxygenConcentration<TypeTag, TTag::VtkBlackOilMICP> { static constexpr bool value = true; };
template<class TypeTag>
struct VtkWriteUreaConcentration<TypeTag, TTag::VtkBlackOilMICP> { static constexpr bool value = true; };
template<class TypeTag>
struct VtkWriteBiofilmConcentration<TypeTag, TTag::VtkBlackOilMICP> { static constexpr bool value = true; };
template<class TypeTag>
struct VtkWriteCalciteConcentration<TypeTag, TTag::VtkBlackOilMICP> { static constexpr bool value = true; };
 
} // namespace Opm::Properties
 
namespace Opm {
template <class TypeTag>
class VtkBlackOilMICPModule : public BaseOutputModule<TypeTag>
{
    using ParentType = BaseOutputModule<TypeTag>;
 
    using Simulator = GetPropType<TypeTag, Properties::Simulator>;
    using GridView = GetPropType<TypeTag, Properties::GridView>;
    using Scalar = GetPropType<TypeTag, Properties::Scalar>;
    using Evaluation = GetPropType<TypeTag, Properties::Evaluation>;
    using ElementContext = GetPropType<TypeTag, Properties::ElementContext>;
 
    static const int vtkFormat = getPropValue<TypeTag, Properties::VtkOutputFormat>();
    using VtkMultiWriter = ::Opm::VtkMultiWriter<GridView, vtkFormat>;
 
    enum { enableMICP = getPropValue<TypeTag, Properties::EnableMICP>() };
 
    using ScalarBuffer = typename ParentType::ScalarBuffer;
 
public:
    VtkBlackOilMICPModule(const Simulator& simulator)
        : ParentType(simulator)
    { }
 
    static void registerParameters()
    {
        if (!enableMICP)
            return;
 
        Parameters::registerParam<TypeTag, Properties::VtkWriteMicrobialConcentration>
            ("Include the concentration of the microbial component in the water phase "
             "in the VTK output files");
        Parameters::registerParam<TypeTag, Properties::VtkWriteOxygenConcentration>
            ("Include the concentration of the oxygen component in the water phase "
             "in the VTK output files");
        Parameters::registerParam<TypeTag, Properties::VtkWriteUreaConcentration>
            ("Include the concentration of the urea component in the water phase "
             "in the VTK output files");
        Parameters::registerParam<TypeTag, Properties::VtkWriteBiofilmConcentration>
            ("Include the biofilm volume fraction in the VTK output files");
        Parameters::registerParam<TypeTag, Properties::VtkWriteCalciteConcentration>
            ("Include the calcite volume fraction in the VTK output files");
    }
 
    void allocBuffers()
    {
        if (!Parameters::get<TypeTag, Properties::EnableVtkOutput>())
            return;
 
        if (!enableMICP)
            return;
 
        if (microbialConcentrationOutput_())
            this->resizeScalarBuffer_(microbialConcentration_);
        if (oxygenConcentrationOutput_())
            this->resizeScalarBuffer_(oxygenConcentration_);
        if (ureaConcentrationOutput_())
            this->resizeScalarBuffer_(ureaConcentration_);
        if (biofilmConcentrationOutput_())
            this->resizeScalarBuffer_(biofilmConcentration_);
        if (calciteConcentrationOutput_())
            this->resizeScalarBuffer_(calciteConcentration_);
    }
 
    void processElement(const ElementContext& elemCtx)
    {
        if (!Parameters::get<TypeTag, Properties::EnableVtkOutput>())
            return;
 
        if (!enableMICP)
            return;
 
        for (unsigned dofIdx = 0; dofIdx < elemCtx.numPrimaryDof(/*timeIdx=*/0); ++dofIdx) {
            const auto& intQuants = elemCtx.intensiveQuantities(dofIdx, /*timeIdx=*/0);
            unsigned globalDofIdx = elemCtx.globalSpaceIndex(dofIdx, /*timeIdx=*/0);
 
            if (microbialConcentrationOutput_())
                microbialConcentration_[globalDofIdx] =
                    scalarValue(intQuants.microbialConcentration());
 
            if (oxygenConcentrationOutput_())
                oxygenConcentration_[globalDofIdx] =
                    scalarValue(intQuants.oxygenConcentration());
 
            if (ureaConcentrationOutput_())
                ureaConcentration_[globalDofIdx] =
                    10 * scalarValue(intQuants.ureaConcentration());//Multypliging by scaling factor 10 (see WellInterface_impl.hpp)
 
            if (biofilmConcentrationOutput_())
                biofilmConcentration_[globalDofIdx] =
                    scalarValue(intQuants.biofilmConcentration());
 
            if (calciteConcentrationOutput_())
                calciteConcentration_[globalDofIdx] =
                    scalarValue(intQuants.calciteConcentration());
 
        }
    }
 
    void commitBuffers(BaseOutputWriter& baseWriter)
    {
        VtkMultiWriter *vtkWriter = dynamic_cast<VtkMultiWriter*>(&baseWriter);
        if (!vtkWriter)
            return;
 
        if (!enableMICP)
            return;
 
        if (microbialConcentrationOutput_())
            this->commitScalarBuffer_(baseWriter, "microbial concentration", microbialConcentration_);
 
        if (oxygenConcentrationOutput_())
            this->commitScalarBuffer_(baseWriter, "oxygen concentration", oxygenConcentration_);
 
        if (ureaConcentrationOutput_())
            this->commitScalarBuffer_(baseWriter, "urea concentration", ureaConcentration_);
 
        if (biofilmConcentrationOutput_())
            this->commitScalarBuffer_(baseWriter, "biofilm fraction", biofilmConcentration_);
 
        if (calciteConcentrationOutput_())
            this->commitScalarBuffer_(baseWriter, "calcite fraction", calciteConcentration_);
 
    }
 
private:
    static bool microbialConcentrationOutput_()
    {
        static bool val = Parameters::get<TypeTag, Properties::VtkWriteMicrobialConcentration>();
        return val;
    }
 
    static bool oxygenConcentrationOutput_()
    {
        static bool val = Parameters::get<TypeTag, Properties::VtkWriteOxygenConcentration>();
        return val;
    }
 
    static bool ureaConcentrationOutput_()
    {
        static bool val = Parameters::get<TypeTag, Properties::VtkWriteUreaConcentration>();
        return val;
    }
 
    static bool biofilmConcentrationOutput_()
    {
        static bool val = Parameters::get<TypeTag, Properties::VtkWriteBiofilmConcentration>();
        return val;
    }
 
    static bool calciteConcentrationOutput_()
    {
        static bool val = Parameters::get<TypeTag, Properties::VtkWriteCalciteConcentration>();
        return val;
    }
 
    ScalarBuffer microbialConcentration_;
    ScalarBuffer oxygenConcentration_;
    ScalarBuffer ureaConcentration_;
    ScalarBuffer biofilmConcentration_;
    ScalarBuffer calciteConcentration_;
};
} // namespace Opm
 
#endif