GenericTracerModel_impl.hpp

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// -*- mode: C++; tab-width: 4; indent-tabs-mode: nil; c-basic-offset: 4 -*-
// vi: set et ts=4 sw=4 sts=4:
/*
  This file is part of the Open Porous Media project (OPM).
 
  OPM is free software: you can redistribute it and/or modify
  it under the terms of the GNU General Public License as published by
  the Free Software Foundation, either version 2 of the License, or
  (at your option) any later version.
 
  OPM is distributed in the hope that it will be useful,
  but WITHOUT ANY WARRANTY; without even the implied warranty of
  MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
  GNU General Public License for more details.
 
  You should have received a copy of the GNU General Public License
  along with OPM.  If not, see <http://www.gnu.org/licenses/>.
 
  Consult the COPYING file in the top-level source directory of this
  module for the precise wording of the license and the list of
  copyright holders.
*/
#ifndef OPM_GENERIC_TRACER_MODEL_IMPL_HPP
#define OPM_GENERIC_TRACER_MODEL_IMPL_HPP
 
#include <dune/istl/operators.hh>
#include <dune/istl/solvers.hh>
#include <dune/istl/schwarz.hh>
#include <dune/istl/preconditioners.hh>
#include <dune/istl/schwarz.hh>
 
#include <opm/common/OpmLog/OpmLog.hpp>
#include <opm/common/TimingMacros.hpp>
 
#include <opm/grid/CpGrid.hpp>
 
#include <opm/input/eclipse/EclipseState/EclipseState.hpp>
#include <opm/input/eclipse/EclipseState/Tables/TracerVdTable.hpp>
#include <opm/input/eclipse/Schedule/Well/Well.hpp>
#include <opm/input/eclipse/Schedule/Well/WellTracerProperties.hpp>
 
#include <opm/models/discretization/ecfv/ecfvstencil.hh>
 
#include <opm/simulators/flow/GenericTracerModel.hpp>
#include <opm/simulators/linalg/ilufirstelement.hh>
#include <opm/simulators/linalg/PropertyTree.hpp>
#include <opm/simulators/linalg/FlexibleSolver.hpp>
 
#include <fmt/format.h>
 
#include <array>
#include <functional>
#include <memory>
#include <set>
#include <stdexcept>
#include <string>
 
namespace Opm {
 
#if HAVE_MPI
template<class M, class V>
struct TracerSolverSelector
{
    using Comm = Dune::OwnerOverlapCopyCommunication<int, int>;
    using TracerOperator = Dune::OverlappingSchwarzOperator<M, V, V, Comm>;
    using type = Dune::FlexibleSolver<TracerOperator>;
};
 
template<class Vector, class Grid, class Matrix>
std::tuple<std::unique_ptr<Dune::OverlappingSchwarzOperator<Matrix,Vector,Vector,
                                                            Dune::OwnerOverlapCopyCommunication<int,int>>>,
           std::unique_ptr<typename TracerSolverSelector<Matrix,Vector>::type>>
createParallelFlexibleSolver(const Grid&, const Matrix&, const PropertyTree&)
{
    OPM_THROW(std::logic_error, "Grid not supported for parallel Tracers.");
    return {nullptr, nullptr};
}
 
template<class Vector, class Matrix>
std::tuple<std::unique_ptr<Dune::OverlappingSchwarzOperator<Matrix,Vector,Vector,
                                                            Dune::OwnerOverlapCopyCommunication<int,int>>>,
           std::unique_ptr<typename TracerSolverSelector<Matrix,Vector>::type>>
createParallelFlexibleSolver(const Dune::CpGrid& grid, const Matrix& M, const PropertyTree& prm)
{
        using TracerOperator = Dune::OverlappingSchwarzOperator<Matrix,Vector,Vector,
                                                                Dune::OwnerOverlapCopyCommunication<int,int>>;
        using TracerSolver = Dune::FlexibleSolver<TracerOperator>;
        const auto& cellComm = grid.cellCommunication();
        auto op = std::make_unique<TracerOperator>(M, cellComm);
        auto dummyWeights = [](){ return Vector();};
        return {std::move(op), std::make_unique<TracerSolver>(*op, cellComm, prm, dummyWeights, 0)};
}
#endif
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
GenericTracerModel(const GridView& gridView,
                   const EclipseState& eclState,
                   const CartesianIndexMapper& cartMapper,
                   const DofMapper& dofMapper,
                   const std::function<std::array<double,dimWorld>(int)> centroids)
    : gridView_(gridView)
    , eclState_(eclState)
    , cartMapper_(cartMapper)
    , dofMapper_(dofMapper)
    , centroids_(centroids)
{
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
Scalar GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
freeTracerConcentration(int tracerIdx, int globalDofIdx) const
{
    if (freeTracerConcentration_.empty()) {
        return 0.0;
    }
 
    return freeTracerConcentration_[tracerIdx][globalDofIdx];
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
Scalar GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
solTracerConcentration(int tracerIdx, int globalDofIdx) const
{
    if (solTracerConcentration_.empty()) {
        return 0.0;
    }
 
    return solTracerConcentration_[tracerIdx][globalDofIdx];
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
void GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
setFreeTracerConcentration(int tracerIdx, int globalDofIdx, Scalar value)
{
    this->freeTracerConcentration_[tracerIdx][globalDofIdx] = value;
    this->tracerConcentration_[tracerIdx][globalDofIdx][0] = value;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
void GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
setSolTracerConcentration(int tracerIdx, int globalDofIdx, Scalar value)
{
    this->solTracerConcentration_[tracerIdx][globalDofIdx] = value;
    this->tracerConcentration_[tracerIdx][globalDofIdx][1] = value;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
void GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
setEnableSolTracers(int tracerIdx, bool enableSolTracer)
{
    this->enableSolTracers_[tracerIdx] = enableSolTracer;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
int GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
numTracers() const
{
    return this->eclState_.tracer().size();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
std::string GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
fname(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].fname();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
std::string GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
sname(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].sname();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
std::string GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
wellfname(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].wellfname();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
std::string GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
wellsname(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].wellsname();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
Phase GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
phase(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].phase;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
const std::vector<bool>& GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
enableSolTracers() const
{
    return this->enableSolTracers_;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
Scalar GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
currentConcentration_(const Well& eclWell, const std::string& name) const
{
    return eclWell.getTracerProperties().getConcentration(name);
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
const std::string& GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
name(int tracerIdx) const
{
    return this->eclState_.tracer()[tracerIdx].name;
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
void GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
doInit(bool rst, std::size_t numGridDof,
       std::size_t gasPhaseIdx, std::size_t oilPhaseIdx, std::size_t waterPhaseIdx)
{
    const auto& tracers = eclState_.tracer();
 
    if (tracers.size() == 0) {
        return; // tracer treatment is supposed to be disabled
    }
 
    // retrieve the number of tracers from the deck
    const std::size_t numTracers = tracers.size();
    enableSolTracers_.resize(numTracers);
    tracerConcentration_.resize(numTracers);
    freeTracerConcentration_.resize(numTracers);
    solTracerConcentration_.resize(numTracers);
 
    // the phase where the tracer is
    tracerPhaseIdx_.resize(numTracers);
    for (std::size_t tracerIdx = 0; tracerIdx < numTracers; tracerIdx++) {
        const auto& tracer = tracers[tracerIdx];
 
        if (tracer.phase == Phase::WATER)
            tracerPhaseIdx_[tracerIdx] = waterPhaseIdx;
        else if (tracer.phase == Phase::OIL)
            tracerPhaseIdx_[tracerIdx] = oilPhaseIdx;
        else if (tracer.phase == Phase::GAS)
            tracerPhaseIdx_[tracerIdx] = gasPhaseIdx;
 
        tracerConcentration_[tracerIdx].resize(numGridDof);
        freeTracerConcentration_[tracerIdx].resize(numGridDof);
        solTracerConcentration_[tracerIdx].resize(numGridDof);
 
        if (rst)
            continue;
 
 
        // TBLKF keyword
        if (tracer.free_concentration.has_value()){
            const auto& free_concentration = tracer.free_concentration.value();
            int tblkDatasize = free_concentration.size();
            if (tblkDatasize < cartMapper_.cartesianSize()){
                throw std::runtime_error("Wrong size of TBLKF for" + tracer.name);
            }
            for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                int cartDofIdx = cartMapper_.cartesianIndex(globalDofIdx);
                tracerConcentration_[tracerIdx][globalDofIdx][0] = free_concentration[cartDofIdx];
                freeTracerConcentration_[tracerIdx][globalDofIdx] = free_concentration[cartDofIdx];
            }
        }
        // TVDPF keyword
        else if (tracer.free_tvdp.has_value()) {
            const auto& free_tvdp = tracer.free_tvdp.value();
            for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                tracerConcentration_[tracerIdx][globalDofIdx][0] =
                    free_tvdp.evaluate("TRACER_CONCENTRATION",
                                       centroids_(globalDofIdx)[2]);
                freeTracerConcentration_[tracerIdx][globalDofIdx] =
                    free_tvdp.evaluate("TRACER_CONCENTRATION",
                                       centroids_(globalDofIdx)[2]);
            }
        } 
        else {
            OpmLog::warning(fmt::format("No TBLKF or TVDPF given for free tracer {}. "
                                        "Initial values set to zero. ", tracer.name));
            for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                tracerConcentration_[tracerIdx][globalDofIdx][0] = 0.0;
                freeTracerConcentration_[tracerIdx][globalDofIdx] = 0.0;
            }
        }
 
        // Solution tracer initialization only needed for gas/oil tracers with DISGAS/VAPOIL active
        if (tracer.phase != Phase::WATER && 
            ((tracer.phase == Phase::GAS && FluidSystem::enableDissolvedGas()) || 
             (tracer.phase == Phase::OIL && FluidSystem::enableVaporizedOil()))) {
            // TBLKS keyword
            if (tracer.solution_concentration.has_value()){
                enableSolTracers_[tracerIdx] = true;
                const auto& solution_concentration = tracer.solution_concentration.value();
                int tblkDatasize = solution_concentration.size();
                if (tblkDatasize < cartMapper_.cartesianSize()){
                    throw std::runtime_error("Wrong size of TBLKS for" + tracer.name);
                }
                for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                    int cartDofIdx = cartMapper_.cartesianIndex(globalDofIdx);
                    tracerConcentration_[tracerIdx][globalDofIdx][1] = solution_concentration[cartDofIdx];
                    solTracerConcentration_[tracerIdx][globalDofIdx] = solution_concentration[cartDofIdx];
                }
            }
            // TVDPS keyword
            else if (tracer.solution_tvdp.has_value()) {
                enableSolTracers_[tracerIdx] = true;
                const auto& solution_tvdp = tracer.solution_tvdp.value();
                for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                    tracerConcentration_[tracerIdx][globalDofIdx][1] =
                        solution_tvdp.evaluate("TRACER_CONCENTRATION",
                                            centroids_(globalDofIdx)[2]);
                    solTracerConcentration_[tracerIdx][globalDofIdx] =
                        solution_tvdp.evaluate("TRACER_CONCENTRATION",
                                            centroids_(globalDofIdx)[2]);
                }
            } 
            else {
                // No solution tracers, default to zero
                enableSolTracers_[tracerIdx] = false;
                OpmLog::warning(fmt::format("No TBLKS or TVDPS given for solution tracer {}. "
                                            "Initial values set to zero. ", tracer.name));
                for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                        tracerConcentration_[tracerIdx][globalDofIdx][1] = 0.0;
                        solTracerConcentration_[tracerIdx][globalDofIdx] = 0.0;
                }
            }
        }
        else {
            // No solution tracers, default to zero
            enableSolTracers_[tracerIdx] = false;
            for (std::size_t globalDofIdx = 0; globalDofIdx < numGridDof; ++globalDofIdx) {
                tracerConcentration_[tracerIdx][globalDofIdx][1] = 0.0;
                solTracerConcentration_[tracerIdx][globalDofIdx] = 0.0;
            }
        }
    }
 
    // allocate matrix for storing the Jacobian of the tracer residual
    tracerMatrix_ = std::make_unique<TracerMatrix>(numGridDof, numGridDof, TracerMatrix::random);
 
    // find the sparsity pattern of the tracer matrix
    using NeighborSet = std::set<unsigned>;
    std::vector<NeighborSet> neighbors(numGridDof);
 
    Stencil stencil(gridView_, dofMapper_);
    for (const auto& elem : elements(gridView_)) {
        stencil.update(elem);
 
        for (unsigned primaryDofIdx = 0; primaryDofIdx < stencil.numPrimaryDof(); ++primaryDofIdx) {
            unsigned myIdx = stencil.globalSpaceIndex(primaryDofIdx);
 
            for (unsigned dofIdx = 0; dofIdx < stencil.numDof(); ++dofIdx) {
                unsigned neighborIdx = stencil.globalSpaceIndex(dofIdx);
                neighbors[myIdx].insert(neighborIdx);
            }
        }
    }
 
    // allocate space for the rows of the matrix
    for (unsigned dofIdx = 0; dofIdx < numGridDof; ++ dofIdx) {
        tracerMatrix_->setrowsize(dofIdx, neighbors[dofIdx].size());
    }
    tracerMatrix_->endrowsizes();
 
    // fill the rows with indices. each degree of freedom talks to
    // all of its neighbors. (it also talks to itself since
    // degrees of freedom are sometimes quite egocentric.)
    for (unsigned dofIdx = 0; dofIdx < numGridDof; ++ dofIdx) {
        for (const auto& index : neighbors[dofIdx]) {
            tracerMatrix_->addindex(dofIdx, index);
        }
    }
    tracerMatrix_->endindices();
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
bool GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
linearSolve_(const TracerMatrix& M, TracerVector& x, TracerVector& b)
{
    x = 0.0;
    Scalar tolerance = 1e-2;
    int maxIter = 100;
 
    int verbosity = 0;
    PropertyTree prm;
    prm.put("maxiter", maxIter);
    prm.put("tol", tolerance);
    prm.put("verbosity", verbosity);
    prm.put("solver", std::string("bicgstab"));
    prm.put("preconditioner.type", std::string("ParOverILU0"));
 
#if HAVE_MPI
    if(gridView_.grid().comm().size() > 1)
    {
        auto [tracerOperator, solver] =
            createParallelFlexibleSolver<TracerVector>(gridView_.grid(), M, prm);
        (void) tracerOperator;
 
        Dune::InverseOperatorResult result;
        solver->apply(x, b, result);
 
        // return the result of the solver
        return result.converged;
    }
    else
    {
#endif
        using TracerSolver = Dune::BiCGSTABSolver<TracerVector>;
        using TracerOperator = Dune::MatrixAdapter<TracerMatrix,TracerVector,TracerVector>;
        using TracerScalarProduct = Dune::SeqScalarProduct<TracerVector>;
        using TracerPreconditioner = Dune::SeqILU< TracerMatrix,TracerVector,TracerVector>;
 
        TracerOperator tracerOperator(M);
        TracerScalarProduct tracerScalarProduct;
        TracerPreconditioner tracerPreconditioner(M, 0, 1); // results in ILU0
 
        TracerSolver solver (tracerOperator, tracerScalarProduct,
                             tracerPreconditioner, tolerance, maxIter,
                             verbosity);
 
        Dune::InverseOperatorResult result;
        solver.apply(x, b, result);
 
        // return the result of the solver
        return result.converged;
#if HAVE_MPI
    }
#endif
}
 
template<class Grid, class GridView, class DofMapper, class Stencil, class FluidSystem, class Scalar>
bool GenericTracerModel<Grid,GridView,DofMapper,Stencil,FluidSystem,Scalar>::
linearSolveBatchwise_(const TracerMatrix& M, std::vector<TracerVector>& x, std::vector<TracerVector>& b)
{
    OPM_TIMEBLOCK(tracerSolve);
    const Scalar tolerance = 1e-2;
    const int maxIter = 100;
    const int verbosity = 0;
 
#if HAVE_MPI
    if (gridView_.grid().comm().size() > 1)
    {
        PropertyTree prm;
        prm.put("maxiter", maxIter);
        prm.put("tol", tolerance);
        prm.put("verbosity", verbosity);
        prm.put("solver", std::string("bicgstab"));
        prm.put("preconditioner.type", std::string("ParOverILU0"));
        auto [tracerOperator, solver] =
            createParallelFlexibleSolver<TracerVector>(gridView_.grid(), M, prm);
        (void) tracerOperator;
        bool converged = true;
        for (std::size_t nrhs = 0; nrhs < b.size(); ++nrhs) {
            x[nrhs] = 0.0;
            Dune::InverseOperatorResult result;
            solver->apply(x[nrhs], b[nrhs], result);
            converged = (converged && result.converged);
        }
        return converged;
    }
    else
#endif
    {
        using TracerSolver = Dune::BiCGSTABSolver<TracerVector>;
        using TracerOperator = Dune::MatrixAdapter<TracerMatrix,TracerVector,TracerVector>;
        using TracerScalarProduct = Dune::SeqScalarProduct<TracerVector>;
        using TracerPreconditioner = Dune::SeqILU<TracerMatrix,TracerVector,TracerVector>;
 
        if (std::all_of(b.begin(), b.end(),
            [](const auto& v) { return v.infinity_norm() == 0.0; }))
        {
            return true;
        }
 
        TracerOperator tracerOperator(M);
        TracerScalarProduct tracerScalarProduct;
        TracerPreconditioner tracerPreconditioner(M, 0, 1); // results in ILU0
 
        TracerSolver solver (tracerOperator, tracerScalarProduct,
                             tracerPreconditioner, tolerance, maxIter,
                             verbosity);
 
        bool converged = true;
        for (std::size_t nrhs = 0; nrhs < b.size(); ++nrhs) {
            x[nrhs] = 0.0;
            Dune::InverseOperatorResult result;
            solver.apply(x[nrhs], b[nrhs], result);
            converged = (converged && result.converged);
        }
 
        // return the result of the solver
        return converged;
    }
}
 
} // namespace Opm
 
#endif // OPM_GENERIC_TRACER_MODEL_IMPL_HPP