From mlfarias201450 at gmail.com Wed Sep 12 12:45:43 2018 From: mlfarias201450 at gmail.com (Manoel Farias) Date: Wed, 12 Sep 2018 09:45:43 -0300 Subject: [Opm] Synthetic PLT and RFT generation using Resinght Message-ID: Hi Guys, Does anybody have a step-by-step procedure to create a RFT plot? Currently, I am studying a problem with a strong API/RGO vertical gradation. I would like to check depletion at different levels. Do I have add addtional keywords in my Summary Section? Thanks in advance, Manoel -------------- next part -------------- An HTML attachment was scrubbed... URL: From axeldorian.pt at gmail.com Mon Sep 17 05:49:01 2018 From: axeldorian.pt at gmail.com (Axel Dorian PIEPI TOKO) Date: Mon, 17 Sep 2018 06:49:01 +0100 Subject: [Opm] Low Sanility WaterFlooding Message-ID: Hello Open Porous Media Support, Please I would like to know if when running simulation we can run "Low Sanility Water Flooding"?. If yes what is Keyword to use which is recognised by OPM? Thanks for your time and consideration. Best Regards, Axel Dorian. *Reservoir Engineer* *SPE Member* -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.baxendale at gmail.com Tue Sep 18 00:55:47 2018 From: david.baxendale at gmail.com (David Baxendale (Private)) Date: Tue, 18 Sep 2018 08:55:47 +0800 Subject: [Opm] Opm Digest, Vol 33, Issue 2 In-Reply-To: References: Message-ID: <90943fc2-749c-0ccc-8e63-c3fc2fbdde7f@gmail.com> Not sure what you are asking here. OPM FLOW can handle water flooding but not the effect of salt in polymer fluids. For water floods the water PVT properties are important namely viscosity. ThunderBird Signature File Regards, OPMUSER ------------------------------------------------------------------------ On 17-Sep-18 20:00, opm-request at opm-project.org wrote: > Send Opm mailing list submissions to > opm at opm-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://opm-project.org/cgi-bin/mailman/listinfo/opm > or, via email, send a message with subject or body 'help' to > opm-request at opm-project.org > > You can reach the person managing the list at > opm-owner at opm-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Opm digest..." > > > Today's Topics: > > 1. Low Sanility WaterFlooding (Axel Dorian PIEPI TOKO) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Mon, 17 Sep 2018 06:49:01 +0100 > From: Axel Dorian PIEPI TOKO > To: opm at opm-project.org > Subject: [Opm] Low Sanility WaterFlooding > Message-ID: > > Content-Type: text/plain; charset="utf-8" > > Hello Open Porous Media Support, > Please I would like to know if when running simulation we can run "Low > Sanility Water Flooding"?. > If yes what is Keyword to use which is recognised by OPM? > Thanks for your time and consideration. > > Best Regards, > > Axel Dorian. > *Reservoir Engineer* > *SPE Member* > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > Opm mailing list > Opm at opm-project.org > https://opm-project.org/cgi-bin/mailman/listinfo/opm > > > ------------------------------ > > End of Opm Digest, Vol 33, Issue 2 > ********************************** --- This email has been checked for viruses by Avast antivirus software. https://www.avast.com/antivirus -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.baxendale at gmail.com Tue Sep 18 00:57:25 2018 From: david.baxendale at gmail.com (David Baxendale (Private)) Date: Tue, 18 Sep 2018 08:57:25 +0800 Subject: [Opm] Opm Digest, Vol 33, Issue 1 - Resend without Figures In-Reply-To: References: Message-ID: Manoel, If you just want to plot the simulated pressure profile versus depth then you don't need any additional keywords in the SUMMARY section, as ResInsight extracts the pressure profile from the solution pressure array. To do this just: In the PLOT screen select Well Log Plots and create a new Well Log Plot, select Simulation Well option and select a well and the pressure variable, You should then get a plot like this: *FIGURE DELETED* If you want to use the RFT Plot option then you have to tell OPM Flow when to write out the RFT data. this done in the SCHEDULE section using the WRFTPLT keyword, like this: WRFTPLT 'D-4H' 'YES' 'YES' 1* / / Then you can use the RFT Plot option to display the pressure profile by selecting the well and grid together with the time steps for which you have requested the output. The plot should look something like this: *FIGURE DELETED* OPMUSER ThunderBird Signature File ------------------------------------------------------------------------ On 13-Sep-18 20:00, opm-request at opm-project.org wrote: > Send Opm mailing list submissions to > opm at opm-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://opm-project.org/cgi-bin/mailman/listinfo/opm > or, via email, send a message with subject or body 'help' to > opm-request at opm-project.org > > You can reach the person managing the list at > opm-owner at opm-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Opm digest..." > > > Today's Topics: > > 1. Synthetic PLT and RFT generation using Resinght (Manoel Farias) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Wed, 12 Sep 2018 09:45:43 -0300 > From: Manoel Farias > To:opm at opm-project.org > Subject: [Opm] Synthetic PLT and RFT generation using Resinght > Message-ID: > > Content-Type: text/plain; charset="utf-8" > > Hi Guys, > > Does anybody have a step-by-step procedure to create a RFT plot? > > Currently, I am studying a problem with a strong API/RGO vertical > gradation. > > I would like to check depletion at different levels. > > Do I have add addtional keywords in my Summary Section? > > Thanks in advance, > > Manoel > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > > ------------------------------ > > Subject: Digest Footer > > _______________________________________________ > Opm mailing list > Opm at opm-project.org > https://opm-project.org/cgi-bin/mailman/listinfo/opm > > > ------------------------------ > > End of Opm Digest, Vol 33, Issue 1 > ********************************** --- This email has been checked for viruses by Avast antivirus software. https://www.avast.com/antivirus -------------- next part -------------- An HTML attachment was scrubbed... URL: From abir at equinor.com Tue Sep 18 15:53:53 2018 From: abir at equinor.com (Alf Birger Rustad) Date: Tue, 18 Sep 2018 15:53:53 +0000 Subject: [Opm] Low Sanility WaterFlooding In-Reply-To: References: Message-ID: Hi Axel, Sorry, low salinity flooding is not supported, and there are no plans to support it. The usual "patches are welcome" applies though. Cheers, Alf ________________________________ Fra: Opm på vegne av Axel Dorian PIEPI TOKO Sendt: mandag 17. september 2018 07.49.01 Til: opm at opm-project.org Emne: [Opm] Low Sanility WaterFlooding Hello Open Porous Media Support, Please I would like to know if when running simulation we can run "Low Sanility Water Flooding"?. If yes what is Keyword to use which is recognised by OPM? Thanks for your time and consideration. Best Regards, Axel Dorian. Reservoir Engineer SPE Member ------------------------------------------------------------------- The information contained in this message may be CONFIDENTIAL and is intended for the addressee only. Any unauthorized use, dissemination of the information or copying of this message is prohibited. If you are not the addressee, please notify the sender immediately by return e-mail and delete this message. Thank you -------------- next part -------------- An HTML attachment was scrubbed... URL: From sindimo at gmail.com Wed Sep 26 01:30:26 2018 From: sindimo at gmail.com (sindimo) Date: Tue, 25 Sep 2018 21:30:26 -0400 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs Message-ID: Hi, I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through OPM repo, version 2018.04). I am able to successfully run in parallel some of the test models (norne, spe5, spe9), however spe10model2 always hangs when I try to launch it. It seems it hangs during the cell partitioning as below. It just partially does the partitioning on a subset of the processes only (example below where I have 4 processes and it hangs after doing 2 partitions, I've also tried with 8 processors and it shows similar behavior). Any help with this is much appreciated as I need to run SPE10 for some work I am doing, many thanks! Sincerely, Mohamad mpirun -np 4 /usr/lib64/mpich/bin/flow SPE10_MODEL2.DATA output_dir=out_parallel ********************************************************************** * * * This is flow 2018.04 * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * * including solvent and polymer capabilities. * * For more information, see https://opm-project.org * * * ********************************************************************** After loadbalancing process 0 has 322630 cells. After loadbalancing process 3 has 340338 cells. -------------- next part -------------- An HTML attachment was scrubbed... URL: From markus at dr-blatt.de Wed Sep 26 08:10:26 2018 From: markus at dr-blatt.de (Markus Blatt) Date: Wed, 26 Sep 2018 10:10:26 +0200 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: References: Message-ID: <20180926081026.GB3152@smaug> Hi On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through > OPM repo, version 2018.04). > > I am able to successfully run in parallel some of the test models (norne, > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > seems it hangs during the cell partitioning as below. It just partially > does the partitioning on a subset of the processes only (example below > where I have 4 processes and it hangs after doing 2 partitions, I've also > tried with 8 processors and it shows similar behavior). Any help with this > is much appreciated as I need to run SPE10 for some work I am doing, many > thanks! May I ask what work that is? So you are using a release (even of a target distribution). That is a bit weired. Unfortunately I do not have access to such a system and cannot be of much help here. Maybe somebody else can do a quick test? But I did a quick test with the current master on my system and it works with 4 processes. So if nobody else can help you, then you might want to checkout master and compile OPM yourself. Cheers, Markus -- Dr. Markus Blatt - HPC-Simulation-Software & Services http://www.dr-blatt.de Pedettistr. 38, 85072 Eichstätt, Germany, USt-Id: DE279960836 Tel.: +49 (0) 160 97590858 From sindimo at gmail.com Wed Sep 26 19:43:24 2018 From: sindimo at gmail.com (sindimo) Date: Wed, 26 Sep 2018 15:43:24 -0400 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: <20180926081026.GB3152@smaug> References: <20180926081026.GB3152@smaug> Message-ID: Dear Dr. Blatt, Thank you for your reply, I really appreciate it. I am running that model as part of my PhD research work at MIT, it's one of the main models I am benchmarking. I was suspecting this might be an issue with Flow RedHat7/MPICH build but I am able to reproduce the same problem even on an Ubuntu machine with OpenMPI. Below are step by step instructions on how to reproduce the hang on a freshly installed AWS Ubuntu machine in case this helps with investigating it further. Similarly this is reproducible on a freshly installed AWS RedHat7 machine (but using yum to install flow). Thanks again. Sincerely, Mohamad Sindi #--------------Steps to reproduce problem------------------------------------- #Launch a fresh new machine instance on Amazon AWS for Ubuntu Server 16.04 (e.g. m4.2xlarge with 32 GB RAM and 4 cores) #Install OPM Flow using instructions from website ( https://opm-project.org/?page_id=245): sudo apt-get update sudo apt-get install software-properties-common sudo apt-add-repository ppa:opm/ppa sudo apt-get update sudo apt-get install mpi-default-bin sudo apt-get install libopm-simulators-bin #Get spe10model2 model from https://github.com/OPM/opm-data/tree/master/spe10model2 #These are the md5sum for the files used just to make sure we are running the exact same model: ubuntu at ip-172-31-42-209:~/spe10model2$ ls SPE10_MODEL2.DATA SPE10MODEL2_PERM.INC SPE10MODEL2_PHI.INC SPE10MODEL2_TOPS.INC ubuntu at ip-172-31-42-209:~/spe10model2$ md5sum * 322c2d60c8f6a7982fc03a42630ba001 SPE10_MODEL2.DATA 72b5f0f1c8fe3ef133bd533c784ff479 SPE10MODEL2_PERM.INC 9bcc43dbaa2670b4ab2190fef3664310 SPE10MODEL2_PHI.INC 2a24fda84f073e96af295b8116400fd3 SPE10MODEL2_TOPS.INC #Run the model which hangs (seems during cell partitioning): ubuntu at ip-172-31-42-209:~/spe10model2$ mpirun --mca btl tcp,self -np 4 /usr/bin/flow SPE10_MODEL2.DATA output_dir=out_parallel ********************************************************************** * * * This is flow 2018.04 * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * * including solvent and polymer capabilities. * * For more information, see https://opm-project.org * * * ********************************************************************** After loadbalancing process 0 has 322630 cells. On Wed, Sep 26, 2018 at 4:10 AM Markus Blatt wrote: > Hi > > On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: > > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum > through > > OPM repo, version 2018.04). > > > > I am able to successfully run in parallel some of the test models > (norne, > > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > > seems it hangs during the cell partitioning as below. It just partially > > does the partitioning on a subset of the processes only (example below > > where I have 4 processes and it hangs after doing 2 partitions, I've also > > tried with 8 processors and it shows similar behavior). Any help with > this > > is much appreciated as I need to run SPE10 for some work I am doing, many > > thanks! > > May I ask what work that is? > > So you are using a release (even of a target distribution). That is a bit > weired. > Unfortunately I do not have access to such a system and cannot be of much > help here. > Maybe somebody else can do a quick test? > > But I did a quick test with the current master on my system and it works > with 4 processes. > So if nobody else can help you, then you might want to checkout master and > compile > OPM yourself. > > Cheers, > > Markus > > -- > Dr. Markus Blatt - HPC-Simulation-Software & Services > http://www.dr-blatt.de > Pedettistr. 38, 85072 Eichstätt, Germany, USt-Id: DE279960836 > Tel.: +49 (0) 160 97590858 > _______________________________________________ > Opm mailing list > Opm at opm-project.org > https://opm-project.org/cgi-bin/mailman/listinfo/opm > -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.baxendale at gmail.com Thu Sep 27 00:56:02 2018 From: david.baxendale at gmail.com (David Baxendale (Private)) Date: Thu, 27 Sep 2018 08:56:02 +0800 Subject: [Opm] Opm Digest, Vol 33, Issue 5 In-Reply-To: References: Message-ID: Markus, I tried running this deck in sequential mode in an Ubuntu VM and it just fails: david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ flow SPE10_MODEL2.DATA ********************************************************************** * * *                        This is flow 2018.04                        * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * *             including solvent and polymer capabilities.            * *          For more information, see https://opm-project.org          * * * ********************************************************************** Killed david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ I ran under strace and got david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ tail SPE_MODEL2A.LOG mprotect(0x7f48f54a4000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a5000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a6000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a7000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a8000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a9000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54aa000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54ab000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54ac000, 4096, PROT_READ|PROT_WRITE +++ exited with 65 +++ david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ So something is amiss here. Regards, OPMUSER ------------------------------------------------------------------------ On 26-Sep-18 20:00, opm-request at opm-project.org wrote: > Send Opm mailing list submissions to > opm at opm-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > https://opm-project.org/cgi-bin/mailman/listinfo/opm > or, via email, send a message with subject or body 'help' to > opm-request at opm-project.org > > You can reach the person managing the list at > opm-owner at opm-project.org > > When replying, please edit your Subject line so it is more specific > than "Re: Contents of Opm digest..." > > > Today's Topics: > > 1. MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (sindimo) > 2. Re: MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (Markus Blatt) > > > ---------------------------------------------------------------------- > > Message: 1 > Date: Tue, 25 Sep 2018 21:30:26 -0400 > From: sindimo > To: opm at opm-project.org > Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs > Message-ID: > > Content-Type: text/plain; charset="utf-8" > > Hi, > > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through > OPM repo, version 2018.04). > > I am able to successfully run in parallel some of the test models (norne, > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > seems it hangs during the cell partitioning as below. It just partially > does the partitioning on a subset of the processes only (example below > where I have 4 processes and it hangs after doing 2 partitions, I've also > tried with 8 processors and it shows similar behavior). Any help with this > is much appreciated as I need to run SPE10 for some work I am doing, many > thanks! > > Sincerely, > > Mohamad > > > mpirun -np 4 /usr/lib64/mpich/bin/flow SPE10_MODEL2.DATA > output_dir=out_parallel > > ********************************************************************** > * * > * This is flow 2018.04 * > * * > * Flow is a simulator for fully implicit three-phase black-oil flow, * > * including solvent and polymer capabilities. * > * For more information, see https://opm-project.org * > * * > ********************************************************************** > > After loadbalancing process 0 has 322630 cells. > After loadbalancing process 3 has 340338 cells. > -------------- next part -------------- > An HTML attachment was scrubbed... > URL: > > ------------------------------ > > Message: 2 > Date: Wed, 26 Sep 2018 10:10:26 +0200 > From: Markus Blatt > To: opm at opm-project.org > Subject: Re: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs > Message-ID: <20180926081026.GB3152 at smaug> > Content-Type: text/plain; charset=iso-8859-1 > > Hi > > On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: >> I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through >> OPM repo, version 2018.04). >> >> I am able to successfully run in parallel some of the test models (norne, >> spe5, spe9), however spe10model2 always hangs when I try to launch it. It >> seems it hangs during the cell partitioning as below. It just partially >> does the partitioning on a subset of the processes only (example below >> where I have 4 processes and it hangs after doing 2 partitions, I've also >> tried with 8 processors and it shows similar behavior). Any help with this >> is much appreciated as I need to run SPE10 for some work I am doing, many >> thanks! > May I ask what work that is? > > So you are using a release (even of a target distribution). That is a bit weired. > Unfortunately I do not have access to such a system and cannot be of much help here. > Maybe somebody else can do a quick test? > > But I did a quick test with the current master on my system and it works with 4 processes. > So if nobody else can help you, then you might want to checkout master and compile > OPM yourself. > > Cheers, > > Markus > --- This email has been checked for viruses by Avast antivirus software. https://www.avast.com/antivirus -------------- next part -------------- An HTML attachment was scrubbed... URL: From abir at equinor.com Thu Sep 27 07:47:02 2018 From: abir at equinor.com (Alf Birger Rustad) Date: Thu, 27 Sep 2018 07:47:02 +0000 Subject: [Opm] Opm Digest, Vol 33, Issue 5 In-Reply-To: References: Message-ID: Hi David, Just ran a test over here on Red Hat 6. The case runs, but memory consumption seems to be in the order of 5GB. Are you sure your VM has enough memory? Cheers, Alf From: Opm On Behalf Of David Baxendale (Private) Sent: 27. september 2018 02:56 To: opm at opm-project.org Subject: Re: [Opm] Opm Digest, Vol 33, Issue 5 Markus, I tried running this deck in sequential mode in an Ubuntu VM and it just fails: david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ flow SPE10_MODEL2.DATA ********************************************************************** * * * This is flow 2018.04 * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * * including solvent and polymer capabilities. * * For more information, see https://opm-project.org * * * ********************************************************************** Killed david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ I ran under strace and got david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ tail SPE_MODEL2A.LOG mprotect(0x7f48f54a4000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a5000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a6000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a7000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a8000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54a9000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54aa000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54ab000, 4096, PROT_READ|PROT_WRITE) = 0 mprotect(0x7f48f54ac000, 4096, PROT_READ|PROT_WRITE +++ exited with 65 +++ david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ So something is amiss here. Regards, OPMUSER ________________________________ On 26-Sep-18 20:00, opm-request at opm-project.org wrote: Send Opm mailing list submissions to opm at opm-project.org To subscribe or unsubscribe via the World Wide Web, visit https://opm-project.org/cgi-bin/mailman/listinfo/opm or, via email, send a message with subject or body 'help' to opm-request at opm-project.org You can reach the person managing the list at opm-owner at opm-project.org When replying, please edit your Subject line so it is more specific than "Re: Contents of Opm digest..." Today's Topics: 1. MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (sindimo) 2. Re: MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (Markus Blatt) ---------------------------------------------------------------------- Message: 1 Date: Tue, 25 Sep 2018 21:30:26 -0400 From: sindimo To: opm at opm-project.org Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs Message-ID: Content-Type: text/plain; charset="utf-8" Hi, I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through OPM repo, version 2018.04). I am able to successfully run in parallel some of the test models (norne, spe5, spe9), however spe10model2 always hangs when I try to launch it. It seems it hangs during the cell partitioning as below. It just partially does the partitioning on a subset of the processes only (example below where I have 4 processes and it hangs after doing 2 partitions, I've also tried with 8 processors and it shows similar behavior). Any help with this is much appreciated as I need to run SPE10 for some work I am doing, many thanks! Sincerely, Mohamad mpirun -np 4 /usr/lib64/mpich/bin/flow SPE10_MODEL2.DATA output_dir=out_parallel ********************************************************************** * * * This is flow 2018.04 * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * * including solvent and polymer capabilities. * * For more information, see https://opm-project.org * * * ********************************************************************** After loadbalancing process 0 has 322630 cells. After loadbalancing process 3 has 340338 cells. -------------- next part -------------- An HTML attachment was scrubbed... URL: ------------------------------ Message: 2 Date: Wed, 26 Sep 2018 10:10:26 +0200 From: Markus Blatt To: opm at opm-project.org Subject: Re: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs Message-ID: <20180926081026.GB3152 at smaug> Content-Type: text/plain; charset=iso-8859-1 Hi On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through OPM repo, version 2018.04). I am able to successfully run in parallel some of the test models (norne, spe5, spe9), however spe10model2 always hangs when I try to launch it. It seems it hangs during the cell partitioning as below. It just partially does the partitioning on a subset of the processes only (example below where I have 4 processes and it hangs after doing 2 partitions, I've also tried with 8 processors and it shows similar behavior). Any help with this is much appreciated as I need to run SPE10 for some work I am doing, many thanks! May I ask what work that is? So you are using a release (even of a target distribution). That is a bit weired. Unfortunately I do not have access to such a system and cannot be of much help here. Maybe somebody else can do a quick test? But I did a quick test with the current master on my system and it works with 4 processes. So if nobody else can help you, then you might want to checkout master and compile OPM yourself. Cheers, Markus [https://ipmcdn.avast.com/images/icons/icon-envelope-tick-round-orange-animated-no-repeat-v1.gif] Virus-free. www.avast.com ------------------------------------------------------------------- The information contained in this message may be CONFIDENTIAL and is intended for the addressee only. Any unauthorized use, dissemination of the information or copying of this message is prohibited. If you are not the addressee, please notify the sender immediately by return e-mail and delete this message. Thank you -------------- next part -------------- An HTML attachment was scrubbed... URL: From abir at equinor.com Thu Sep 27 08:01:12 2018 From: abir at equinor.com (Alf Birger Rustad) Date: Thu, 27 Sep 2018 08:01:12 +0000 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: References: <20180926081026.GB3152@smaug> Message-ID: Hi Mohamad, I just ran the first time steps of this case with Red Had 6 and OpenMPI, both with one and with four MPI processes. It works over here. I am running on a binary compiled from git yesterday, so I have not checked the release version of flow. So at this point, simply sharing that your problem does not happen on my set-up. Generally speaking, SPE10 model 2 may not be the best model to use. It was created as an upscaling case with exaggerated heterogeneities to deliberately make it difficult to run. We currently do not include it in any of our integration testing, so the probability of having severe convergence issues with default tuning and solvers in flow is high. The SPE9 or Norne model is far better for benchmarking purposes. If you have particular interest in SPE10 model 2, there are a couple of steps you should take. One is to re-write it into a two-phase case (when it was created we did not provide support for running two-phase cases, so gas was added with zero saturation). Then you should test with the multigrid based solver provided through a command line switch (please check the manual for documentation). Lastly, you may also want to play with tolerances. Currently we have relatively strict tolerances by default, and time steps with convergence failure is not accepted by default. This means that hard-to-converge models may fail to run through. Hence, it may not be what you want for SPE10 model 2. Cheers, Alf From: Opm On Behalf Of sindimo Sent: 26. september 2018 21:43 To: Markus Blatt ; opm at opm-project.org Subject: Re: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs Dear Dr. Blatt, Thank you for your reply, I really appreciate it. I am running that model as part of my PhD research work at MIT, it's one of the main models I am benchmarking. I was suspecting this might be an issue with Flow RedHat7/MPICH build but I am able to reproduce the same problem even on an Ubuntu machine with OpenMPI. Below are step by step instructions on how to reproduce the hang on a freshly installed AWS Ubuntu machine in case this helps with investigating it further. Similarly this is reproducible on a freshly installed AWS RedHat7 machine (but using yum to install flow). Thanks again. Sincerely, Mohamad Sindi #--------------Steps to reproduce problem------------------------------------- #Launch a fresh new machine instance on Amazon AWS for Ubuntu Server 16.04 (e.g. m4.2xlarge with 32 GB RAM and 4 cores) #Install OPM Flow using instructions from website (https://opm-project.org/?page_id=245): sudo apt-get update sudo apt-get install software-properties-common sudo apt-add-repository ppa:opm/ppa sudo apt-get update sudo apt-get install mpi-default-bin sudo apt-get install libopm-simulators-bin #Get spe10model2 model from https://github.com/OPM/opm-data/tree/master/spe10model2 #These are the md5sum for the files used just to make sure we are running the exact same model: ubuntu at ip-172-31-42-209:~/spe10model2$ ls SPE10_MODEL2.DATA SPE10MODEL2_PERM.INC SPE10MODEL2_PHI.INC SPE10MODEL2_TOPS.INC ubuntu at ip-172-31-42-209:~/spe10model2$ md5sum * 322c2d60c8f6a7982fc03a42630ba001 SPE10_MODEL2.DATA 72b5f0f1c8fe3ef133bd533c784ff479 SPE10MODEL2_PERM.INC 9bcc43dbaa2670b4ab2190fef3664310 SPE10MODEL2_PHI.INC 2a24fda84f073e96af295b8116400fd3 SPE10MODEL2_TOPS.INC #Run the model which hangs (seems during cell partitioning): ubuntu at ip-172-31-42-209:~/spe10model2$ mpirun --mca btl tcp,self -np 4 /usr/bin/flow SPE10_MODEL2.DATA output_dir=out_parallel ********************************************************************** * * * This is flow 2018.04 * * * * Flow is a simulator for fully implicit three-phase black-oil flow, * * including solvent and polymer capabilities. * * For more information, see https://opm-project.org * * * ********************************************************************** After loadbalancing process 0 has 322630 cells. On Wed, Sep 26, 2018 at 4:10 AM Markus Blatt > wrote: Hi On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through > OPM repo, version 2018.04). > > I am able to successfully run in parallel some of the test models (norne, > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > seems it hangs during the cell partitioning as below. It just partially > does the partitioning on a subset of the processes only (example below > where I have 4 processes and it hangs after doing 2 partitions, I've also > tried with 8 processors and it shows similar behavior). Any help with this > is much appreciated as I need to run SPE10 for some work I am doing, many > thanks! May I ask what work that is? So you are using a release (even of a target distribution). That is a bit weired. Unfortunately I do not have access to such a system and cannot be of much help here. Maybe somebody else can do a quick test? But I did a quick test with the current master on my system and it works with 4 processes. So if nobody else can help you, then you might want to checkout master and compile OPM yourself. Cheers, Markus -- Dr. Markus Blatt - HPC-Simulation-Software & Services http://www.dr-blatt.de Pedettistr. 38, 85072 Eichstätt, Germany, USt-Id: DE279960836 Tel.: +49 (0) 160 97590858 _______________________________________________ Opm mailing list Opm at opm-project.org https://opm-project.org/cgi-bin/mailman/listinfo/opm ------------------------------------------------------------------- The information contained in this message may be CONFIDENTIAL and is intended for the addressee only. Any unauthorized use, dissemination of the information or copying of this message is prohibited. If you are not the addressee, please notify the sender immediately by return e-mail and delete this message. Thank you -------------- next part -------------- An HTML attachment was scrubbed... URL: From markus at dr-blatt.de Thu Sep 27 11:51:42 2018 From: markus at dr-blatt.de (Markus Blatt) Date: Thu, 27 Sep 2018 13:51:42 +0200 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: References: <20180926081026.GB3152@smaug> Message-ID: <20180927115142.GA117851@smaug> Hi, On Wed, Sep 26, 2018 at 03:43:24PM -0400, sindimo wrote: > I was suspecting this might be an issue with Flow RedHat7/MPICH build but I > am able to reproduce the same problem even on an Ubuntu machine with > OpenMPI. > Thanks for the instructions. I had such an ubuntu machine available and it hangs indeed. Might be an issue with our connected to our release. Anyway with a new release upcoming, there will probably be no time to investigate this. I would recommend to try the master branches of the software. On your ubuntu machine you already have dune except for dune-istl. Install it with sudo apt-get install libdune-istl-dev The run the attached build script. It will download OPM and compile it for you. You will find flow in opm-simulators/opm-parallel/bin/flow. This worked for me (at least the load balancing) for the whole simulation there was not enough memory on the virtual machine and the processes got killed with signal 9 Cheers, Markus -- Dr. Markus Blatt - HPC-Simulation-Software & Services http://www.dr-blatt.de Pedettistr. 38, 85072 Eichstätt, Germany, USt-Id: DE279960836 Tel.: +49 (0) 160 97590858 -------------- next part -------------- A non-text attachment was scrubbed... Name: build-opm.sh Type: application/x-sh Size: 6901 bytes Desc: not available URL: -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 833 bytes Desc: not available URL: From markus at dr-blatt.de Thu Sep 27 11:56:28 2018 From: markus at dr-blatt.de (Markus Blatt) Date: Thu, 27 Sep 2018 13:56:28 +0200 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: <20180927115142.GA117851@smaug> References: <20180926081026.GB3152@smaug> <20180927115142.GA117851@smaug> Message-ID: <20180927115628.GB117851@smaug> BTW The script works for RefHat, too. You just need to install dune-istl differently (using yum?) or check it out manually ( git clone https://gitlab.dune-project.org/core/dune-istl; cd dune-istl; git checkout releases/2.4; cd .. From Arne.Morten.Kvarving at sintef.no Thu Sep 27 12:00:55 2018 From: Arne.Morten.Kvarving at sintef.no (Arne Morten Kvarving) Date: Thu, 27 Sep 2018 12:00:55 +0000 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: <20180927115628.GB117851@smaug> References: <20180926081026.GB3152@smaug> <20180927115142.GA117851@smaug> <20180927115628.GB117851@smaug> Message-ID: Alternatively you can try the nightly redhat rpms yum-config-manager --add-repo https://www.opm-projet.org/package/opm-nightly.repo note; do not register the main repo, only the nightly repo. They cannot both be registered (well, they can but it will be ickier to be sure you get the correct packages). -----Original Message----- From: Opm On Behalf Of Markus Blatt Sent: 27. september 2018 13:56 To: opm at opm-project.org Subject: Re: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs BTW The script works for RefHat, too. You just need to install dune-istl differently (using yum?) or check it out manually ( git clone https://gitlab.dune-project.org/core/dune-istl; cd dune-istl; git checkout releases/2.4; cd .. _______________________________________________ Opm mailing list Opm at opm-project.org https://opm-project.org/cgi-bin/mailman/listinfo/opm From and at poware.org Thu Sep 27 17:18:47 2018 From: and at poware.org (Andreas Lauser) Date: Thu, 27 Sep 2018 19:18:47 +0200 Subject: [Opm] Opm Digest, Vol 33, Issue 5 In-Reply-To: References: Message-ID: <5894750.qiScdjX105@singularius> Hi, On Thursday, 27 September 2018 09:47:02 CEST Alf Birger Rustad wrote: > Just ran a test over here on Red Hat 6. The case runs, but memory > consumption seems to be in the order of 5GB. Are you sure your VM has > enough memory? Mohamad -- please note that, because of how the ECL parser currently works, this is also the ballpark per-core memory requirement for parallel runs. cheers Andreas -- Simple makefiles are a unicorn. A myth. [...] Every single case of a supposedly simple Makefile has turned out to be a mule with a carrot glued to its forehead. -- Jussi Pakkanen -------------- next part -------------- A non-text attachment was scrubbed... Name: signature.asc Type: application/pgp-signature Size: 833 bytes Desc: This is a digitally signed message part. URL: From sindimo at gmail.com Thu Sep 27 20:38:42 2018 From: sindimo at gmail.com (sindimo) Date: Thu, 27 Sep 2018 16:38:42 -0400 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: <20180927115142.GA117851@smaug> References: <20180926081026.GB3152@smaug> <20180927115142.GA117851@smaug> Message-ID: Dear Dr. Blatt, Thank you for your confirmation and for providing the build scripts. I'll try building from source using the master branch and see how it goes. Thanks again. Sincerely, Mohamad Sindi On Thu, Sep 27, 2018 at 7:51 AM Markus Blatt wrote: > Hi, > > On Wed, Sep 26, 2018 at 03:43:24PM -0400, sindimo wrote: > > I was suspecting this might be an issue with Flow RedHat7/MPICH build > but I > > am able to reproduce the same problem even on an Ubuntu machine with > > OpenMPI. > > > > Thanks for the instructions. I had such an ubuntu machine available and it > hangs > indeed. Might be an issue with our connected to our release. > > Anyway with a new release upcoming, there will probably be no time to > investigate > this. I would recommend to try the master branches of the software. On > your ubuntu > machine you already have dune except for dune-istl. Install it with > > sudo apt-get install libdune-istl-dev > > The run the attached build script. It will download OPM and compile it for > you. > You will find flow in opm-simulators/opm-parallel/bin/flow. > > This worked for me (at least the load balancing) for the whole simulation > there was > not enough memory on the virtual machine and the processes got killed with > signal 9 > > Cheers, > > Markus > > -- > Dr. Markus Blatt - HPC-Simulation-Software & Services > http://www.dr-blatt.de > Pedettistr. 38, 85072 Eichstätt, Germany, USt-Id: DE279960836 > Tel.: +49 (0) 160 97590858 > -------------- next part -------------- An HTML attachment was scrubbed... URL: From markus at dr-blatt.de Fri Sep 28 05:13:00 2018 From: markus at dr-blatt.de (Markus Blatt) Date: Fri, 28 Sep 2018 07:13:00 +0200 Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs In-Reply-To: References: <20180926081026.GB3152@smaug> <20180927115142.GA117851@smaug> Message-ID: <20180928051300.GA35111@smaug> Hi, you probably figured out that there is a small bug in the script and fixed it already, but anyway: you need to add a line with "fi" in line 54 for the script to work. Cheers, Markus From joaho at equinor.com Fri Sep 28 11:49:28 2018 From: joaho at equinor.com (Joakim Hove) Date: Fri, 28 Sep 2018 11:49:28 +0000 Subject: [Opm] Release 2018.10 Message-ID: Dear OPM community; we are now getting very close to a 2018.10 relase. Among the core developers there are no well known blockers for the relase, and the plan is create release branches (i..e feature freeze) on Tuesday 2nd of october and then final release candidates one week later, on Tuesday 9th of October. If someone in the wider OPM community have opininons in this matter please speak up. Joakim ------------------------------------------------------------------- The information contained in this message may be CONFIDENTIAL and is intended for the addressee only. Any unauthorized use, dissemination of the information or copying of this message is prohibited. If you are not the addressee, please notify the sender immediately by return e-mail and delete this message. Thank you -------------- next part -------------- An HTML attachment was scrubbed... URL: From david.baxendale at gmail.com Sun Sep 30 10:46:28 2018 From: david.baxendale at gmail.com (David Baxendale (Private)) Date: Sun, 30 Sep 2018 18:46:28 +0800 Subject: [Opm] Opm Digest, Vol 33, Issue 5 In-Reply-To: References: Message-ID: <1a599562-0313-c1a2-de03-9493d0efc3e6@gmail.com> Alf, Yes you are correct it was a memory issue with the VM, so now it runs, but extremely slowly even when converting to a water-oil problem. I may play around with this to see if I can get it working when I have a few hours to spare - thanks for the hints ThunderBird Signature File David ------------------------------------------------------------------------ On 27-Sep-18 15:47, Alf Birger Rustad wrote: > > Hi David, > > Just ran a test over here on Red Hat 6. The case runs, but memory > consumption seems to be in the order of 5GB. Are you sure your VM has > enough memory? > > Cheers, > > Alf > > *From:*Opm *On Behalf Of *David > Baxendale (Private) > *Sent:* 27. september 2018 02:56 > *To:* opm at opm-project.org > *Subject:* Re: [Opm] Opm Digest, Vol 33, Issue 5 > > Markus, > > I tried running this deck in sequential mode in an Ubuntu VM and it > just fails: > > david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ flow > SPE10_MODEL2.DATA > ********************************************************************** > * * > *                        This is flow 2018.04                        * > * * > * Flow is a simulator for fully implicit three-phase black-oil flow, * > *             including solvent and polymer capabilities.            * > *          For more information, see https://opm-project.org * > * * > ********************************************************************** > > Killed > david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ > > I ran under strace and got > > david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ tail > SPE_MODEL2A.LOG > mprotect(0x7f48f54a4000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54a5000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54a6000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54a7000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54a8000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54a9000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54aa000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54ab000, 4096, PROT_READ|PROT_WRITE) = 0 > mprotect(0x7f48f54ac000, 4096, PROT_READ|PROT_WRITE > +++ exited with 65 +++ > david at EIPC02-VirtualBox:/media/sf_Linux/OPM-Flow/spe10model2$ > > So something is amiss here. > > Regards, > OPMUSER > ------------------------------------------------------------------------ > > On 26-Sep-18 20:00, opm-request at opm-project.org > wrote: > > Send Opm mailing list submissions to > > opm at opm-project.org > > To subscribe or unsubscribe via the World Wide Web, visit > > https://opm-project.org/cgi-bin/mailman/listinfo/opm > > or, via email, send a message with subject or body 'help' to > > opm-request at opm-project.org > > You can reach the person managing the list at > > opm-owner at opm-project.org > > When replying, please edit your Subject line so it is more specific > > than "Re: Contents of Opm digest..." > > Today's Topics: > >    1. MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (sindimo) > >    2. Re: MPI Parallel OPM Flow - SPE 10 Model 2 Hangs (Markus Blatt) > > ---------------------------------------------------------------------- > > Message: 1 > > Date: Tue, 25 Sep 2018 21:30:26 -0400 > > From: sindimo > > To:opm at opm-project.org > > Subject: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs > > Message-ID: > > > > > Content-Type: text/plain; charset="utf-8" > > Hi, > > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through > > OPM repo, version 2018.04). > > I am able to successfully run in parallel  some of the test models  (norne, > > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > > seems it hangs during the cell partitioning as below. It just partially > > does the partitioning on a subset of the processes only (example below > > where I have 4 processes and it hangs after doing 2 partitions, I've also > > tried with 8 processors and it shows similar behavior). Any help with this > > is much appreciated as I need to run SPE10 for some work I am doing, many > > thanks! > > Sincerely, > > Mohamad > > mpirun  -np 4 /usr/lib64/mpich/bin/flow    SPE10_MODEL2.DATA > > output_dir=out_parallel > > ********************************************************************** > > *                                                                    * > > *                        This is flow 2018.04                        * > > *                                                                    * > > * Flow is a simulator for fully implicit three-phase black-oil flow, * > > *             including solvent and polymer capabilities.            * > > *          For more information, seehttps://opm-project.org           * > > *                                                                    * > > ********************************************************************** > > After loadbalancing process 0 has 322630 cells. > > After loadbalancing process 3 has 340338 cells. > > -------------- next part -------------- > > An HTML attachment was scrubbed... > > URL: > > ------------------------------ > > Message: 2 > > Date: Wed, 26 Sep 2018 10:10:26 +0200 > > From: Markus Blatt > > To:opm at opm-project.org > > Subject: Re: [Opm] MPI Parallel OPM Flow - SPE 10 Model 2 Hangs > > Message-ID: <20180926081026.GB3152 at smaug > > > Content-Type: text/plain; charset=iso-8859-1 > > Hi > > On Tue, Sep 25, 2018 at 09:30:26PM -0400, sindimo wrote: > > I am running OPM Flow with MPICH MPI on RedHat 7 (installed via yum through > > OPM repo, version 2018.04). > > I am able to successfully run in parallel  some of the test models  (norne, > > spe5, spe9), however spe10model2 always hangs when I try to launch it. It > > seems it hangs during the cell partitioning as below. It just partially > > does the partitioning on a subset of the processes only (example below > > where I have 4 processes and it hangs after doing 2 partitions, I've also > > tried with 8 processors and it shows similar behavior). Any help with this > > is much appreciated as I need to run SPE10 for some work I am doing, many > > thanks! > > May I ask what work that is? > > So you are using a release (even of a target distribution). That is a bit weired. > > Unfortunately I do not have access to such a system and cannot be of much help here. > > Maybe somebody else can do a quick test? > > But I did a quick test with the current master on my system and it works with 4 processes. > > So if nobody else can help you, then you might want to checkout master and compile > > OPM yourself. > > Cheers, > > Markus > > > > > > Virus-free. www.avast.com > > > > > > ------------------------------------------------------------------- > The information contained in this message may be CONFIDENTIAL and is > intended for the addressee only. Any unauthorized use, dissemination > of the > information or copying of this message is prohibited. If you are not the > addressee, please notify the sender immediately by return e-mail and > delete > this message. > Thank you --- This email has been checked for viruses by Avast antivirus software. https://www.avast.com/antivirus -------------- next part -------------- An HTML attachment was scrubbed... URL: