[Opm] Error using mpirun after compiling from source

Josimar Alves da Silva jsilva.mit at gmail.com
Tue Aug 25 17:23:41 UTC 2020


Hi,

I am a new user of the opm-project. I compiled the prerequisites and the
opm modules from source on a Ubuntu machine. The opm version that I used is
the 2020.10-pre from the master branch. I did not find any errors during
this process. I tested the installation by running the norne dataset and it
worked fine.

However, when I try to run the same dataset using mpirun I get an error
message. I copy below the error message and I can send the complete output
message if needed. The command that I called was:

mpirun -np 2 flow --parameter-file=NORNE_JS.PARAM

Note that if I run something like this, then it works fine:

flow --parameter-file=NORNE_JS.PARAM

Could you please help me to understand why the mpirun does not work? Is it
possible that there was an error during the installation from source? How
would I go about fixing it?

Thank you in advance,
Josimar

Summary of the error message:

Warning: Region to region summary keyword: RGFT at
/home/josimar/OPM/test/norne/INCLUDE/SUMMARY/summary.data, line 74 is
ignored [0m
[34;1m
Warning: Region to region summary keyword: RWFT at
/home/josimar/OPM/test/norne/INCLUDE/SUMMARY/summary.data, line 76 is
ignored [0m
[GRS4:11127] *** Process received signal ***
[GRS4:11127] Signal: Segmentation fault (11)
[GRS4:11127] Signal code: Address not mapped (1)
[GRS4:11127] Failing at address: 0x55b34de1a000
[GRS4:11127] [ 0]
/lib/x86_64-linux-gnu/libpthread.so.0(+0x128a0)[0x7fd966bc38a0]
[GRS4:11127] [ 1] /lib/x86_64-linux-gnu/libc.so.6(+0x18f046)[0x7fd964ef7046]
[GRS4:11127] [ 2]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Comm_Do_Post+0xb48)[0x7fd96579f028]
[GRS4:11127] [ 3]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Comm_Do_Reverse+0x4d)[0x7fd96579f62d]
[GRS4:11127] [ 4]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Get_Hypergraph_From_Queries+0x1624)[0x7fd96574fb74]
[GRS4:11127] [ 5]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_PHG_Build_Hypergraph+0xa3)[0x7fd96574be13]
[GRS4:11127] [ 6]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_PHG+0x16a)[0x7fd965753bba]
[GRS4:11127] [ 7]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Graph+0x154)[0x7fd965742944]
[GRS4:11127] [ 8]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(+0x24098)[0x7fd96571e098]
[GRS4:11127] [ 9]
/usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_LB_Partition+0x73)[0x7fd96571f273]
[GRS4:11127] [10]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN4Dune6cpgrid30zoltanGraphPartitionGridOnRootB5cxx11ERKNS_6CpGridEPKSt6vectorIN3Opm4WellESaIS6_EEPKdRKNS_23CollectiveCommunicationIP19ompi_communicator_tEENS_16EdgeWeightMethodEi+0x2f3)[0x55b33cb9be23]
[GRS4:11127] [11]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN4Dune6CpGrid11scatterGridB5cxx11ENS_16EdgeWeightMethodEbPKSt6vectorIN3Opm4WellESaIS4_EEPKdbi+0x97)[0x55b33cb76057]
[GRS4:11127] [12]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN3Opm17EclCpGridVanguardINS_10Properties4TTag14EclFlowProblemEE11loadBalanceEv+0x4a4)[0x55b33bd104b4]
[GRS4:11127] [13]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN3Opm9SimulatorINS_10Properties4TTag14EclFlowProblemEEC1Eb+0x6a7)[0x55b33bdf62d7]
[GRS4:11127] [14]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN3Opm12FlowMainEbosINS_10Properties4TTag14EclFlowProblemEE18setupEbosSimulatorEv+0x3b)[0x55b33bdf788b]
[GRS4:11127] [15]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN3Opm12FlowMainEbosINS_10Properties4TTag14EclFlowProblemEE8execute_EMS4_FivEb+0xec)[0x55b33bdf82dc]
[GRS4:11127] [16]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_ZN3Opm20flowEbosBlackoilMainEiPPcbb+0x50)[0x55b33bc5cad0]
[GRS4:11127] [17]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(main+0x104)[0x55b33bbcc7a4]
[GRS4:11127] [18]
/lib/x86_64-linux-gnu/libc.so.6(__libc_start_main+0xe7)[0x7fd964d89b97]
[GRS4:11127] [19]
/home/josimar/Documents/Work/Resources/Software/ReservoirSimulation/OPM_JS/opm-simulators/build/bin/flow(_start+0x2a)[0x55b33bc32daa]
[GRS4:11127] *** End of error message ***
--------------------------------------------------------------------------
mpirun noticed that process rank 0 with PID 0 on node GRS4 exited on signal
11 (Segmentation fault).
--------------------------------------------------------------------------



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