[Opm] Error using mpirun after compiling from source

[Josimar Alves da Silva]

Hi Markus,

Thank you very much for the reply. I checked and it seems that I have
Ubuntu 18.04bionic. See below.

If I understood correctly, according to the Note 1 that you mentioned, the
way to fix this issue is to install the mpi package provided by opm. Could
you comment on how to do this? Alternatively, would it be possible to
direct me to some documentation that helps me to install the mpi properly,
then to rebuild the source codes using the correct mpi installation?

Thank you in advance,
Josimar


Operating System: Ubuntu 18.04.4 LTS

            Kernel: Linux 4.15.0-1093-oem

      Architecture: x86-64

On Tue, Aug 25, 2020 at 2:39 PM Markus Blatt <markus.blatt at opm-op.com>
wrote:

> Hi Josimar,
>
> On Tue, Aug 25, 2020 at 01:23:41PM -0400, Josimar Alves da Silva wrote:
> > [...] I compiled the prerequisites and the
> > opm modules from source on a Ubuntu machine. The opm version that I used
> is
> > the 2020.10-pre from the master branch. [...]
> >
> > However, when I try to run the same dataset using mpirun I get an error
> > message. I copy below the error message and I can send the complete
> output
> > message if needed. The command that I called was:
> >
> > mpirun -np 2 flow --parameter-file=NORNE_JS.PARAM
> >
> > [...]
> >
> > Could you please help me to understand why the mpirun does not work?
> [...]
> >
> > Summary of the error message:
> >
> > Warning: Region to region summary keyword: RGFT at
> > /home/josimar/OPM/test/norne/INCLUDE/SUMMARY/summary.data, line 74 is
> > ignored [0m
> > [34;1m
> > Warning: Region to region summary keyword: RWFT at
> > /home/josimar/OPM/test/norne/INCLUDE/SUMMARY/summary.data, line 76 is
> > ignored [0m
> > [GRS4:11127] *** Process received signal ***
> > [GRS4:11127] Signal: Segmentation fault (11)
> > [GRS4:11127] Signal code: Address not mapped (1)
> > [GRS4:11127] Failing at address: 0x55b34de1a000
> > [GRS4:11127] [ 0]
> > /lib/x86_64-linux-gnu/libpthread.so.0(+0x128a0)[0x7fd966bc38a0]
> > [GRS4:11127] [ 1]
> /lib/x86_64-linux-gnu/libc.so.6(+0x18f046)[0x7fd964ef7046]
> > [GRS4:11127] [ 2]
> >
> /usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Comm_Do_Post+0xb48)[0x7fd96579f028]
> > [GRS4:11127] [ 3]
> >
> /usr/lib/x86_64-linux-gnu/libtrilinos_zoltan.so.12(Zoltan_Comm_Do_Reverse+0x4d)[0x7fd96579f62d]
> > [GRS4:11127] [ 4]
> > [...]
>
>
> it is hard to say, what goes wrong here, apart from stating that it seems
> to happen
> deep down inside the loadlancing of the ZOLTAN library that we use. That
> is aslo the
> reason why it does not happend without mpirun.
>
>
> What Ubuntu version are you using. There have been issues with MPI on
> Ubuntu 18.04bionic.
> See https://opm-project.org/?page_id=245 Note 1 for a workaround. You
> will need to install
> the mpi packages provided by us instead of the official Ubuntu ones.
>
> If you are using another version, then please:
>
> To gain some insight somebody would need to replicate the setup. Would you
> mind
> sharing the parameter file.
>
> HTH,
>
> Markus
>
> --
> Markus Blatt
> CTO @ OPM-OP AS, Heyerdahlsvei 12b, 0777 Oslo, Norway
> https://opm-op.com | +4916097590858
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